1099 or W-2: which are you?
Whether a hygienist is an employee or an independent contractor depends on the facts. The IRS weighs three categories:
- Behavioral control. Does the office control what you do and how you do it?
- Financial control. Who sets your pay, covers expenses and supplies the equipment?
- Type of relationship. Is there a contract, benefits, or an ongoing expectation of work?
If you are unsure, you or the office can file Form SS-8 to ask the IRS for a determination. Practice owners who hire hygienists should apply the same test before issuing a 1099.
For 1099 hygienists: estimates and deductions
Quarterly estimates. With no withholding, you pay income tax and self-employment tax through Form 1040-ES. Self-employment tax is 15.3%: 12.4% for Social Security and 2.9% for Medicare. See quarterly tax planning.
Deductions. Business expenses must be ordinary and necessary. Common ones for independent hygienists:
- License and registration fees.
- Continuing education that maintains or improves your skills.
- Liability and malpractice insurance.
- Scrubs, loupes and supplies used only for work.
- Travel from one office to another on the same day. Commuting from home to a regular office is not deductible.
W-2 hygienists generally cannot deduct unreimbursed job expenses on their federal return. If you work both W-2 and 1099 shifts, only the 1099 side carries business deductions.
Many hygienists file extensions while they sort out 1099s from several offices. See extension filers.
For practice owners: S corporations, salary and retirement plans
S corporation and reasonable compensation. An S corporation owner who works in the practice must take reasonable W-2 compensation before taking distributions. IRS factors include training and experience, duties, time devoted to the practice and what comparable practices pay. See S corp reasonable compensation and LLC vs S corp.
Retirement plans. A SEP is funded only by the employer, and the practice must contribute the same percentage for every eligible employee. A one-participant 401(k) is for an owner with no employees other than a spouse, so it fits an independent hygienist or solo practitioner, not a practice with staff.
Books and payroll. Clean monthly books make quarterly estimates and year-end planning straightforward. See medical and dental practice accounting.
How it works with us
Best for: dental practice owners and associates, and hygienists paid on 1099, W-2 or both, including those who work through staffing apps.
- Free initial consultation. Tell us how you are paid and what you need help with.
- Fees quoted upfront, in writing. Transparent, fair fees before any work starts.
- Review. We review last year’s return, your 1099s and W-2s, and your books if you own a practice.
- Plan. Quarterly estimates, deductions to track, and entity and salary recommendations for owners.
- File. We prepare and file the returns and set up next year’s estimates.
Hygienist on 1099 vs W-2 vs practice owner
| Situation | Returns | Estimated taxes | Key planning items |
|---|---|---|---|
| Hygienist on 1099 | Form 1040 with Schedule C and Schedule SE | Usually yes, quarterly on Form 1040-ES | Track deductions, set aside self-employment tax, consider a SEP or one-participant 401(k) |
| Hygienist on W-2 | Form 1040 | Usually no; tax is withheld | Check withholding (Form W-4); ask for reimbursement of work costs |
| Practice owner (S corporation) | Form 1120-S plus owner’s Form 1040 with Schedule K-1 | Often, for income above withholding | Reasonable salary, payroll, retirement plan for staff, state taxes |
Expert CPAs. Personal attention.
Dental practice owner or 1099 hygienist? Tell us how you're paid and we'll set up a free initial consultation.
Frequently asked questions
Sources
- IRS: Independent contractor (self-employed) or employee?
- IRS: Self-employment tax (Social Security and Medicare taxes)
- IRS Publication 334, Tax Guide for Small Business
- IRS Publication 463, Travel, Gift, and Car Expenses
- IRS Topic 513, Work-related education expenses
- IRS: Instructions for Form 2106 (employee business expenses)
- IRS: S corporation compensation and medical insurance issues
- IRS: Simplified Employee Pension plan (SEP)
- IRS: One-participant 401(k) plans
General information as of October 10, 2026. Tax rules change; talk to a CPA about your situation.